ssu rRNA-targeted oligonucleotide probes for members of Crenarchaeota and of the bacterial Genera Deinococcus, Thermus and Meiothermus
| | Probe | Type | Probe Sequence | Selected | Outgroup | Target Sequences* | |
| | 0 | POS | ATGACATGGCCGTCGGGGTTTT | 1 | 0 | | |
| | | | | | | ThpSpeci | |
| | | | | | | |
| | 1 | POS | CCCGCTTATTCCCTCGGCTTTT | 6 | 0 | | |
| | | | | | | UncArc10 | |
| | | | | | | ThrModes | |
| | | | | | | PrbSpeci | |
| | | | | | | PrbNeutr | |
| | | | | | | CeaPBA2 | |
| | | | | | | ThpNeutr | |
| | | | | | | |
| | 2 | POS | GAGCATGGCGCCGCAACCTTTT | 1 | 0 | | |
| | | | | | | UncArc10 | |
| | | | | | | |
| | 3 | POS | TCAGTCCCGTCATGGGGGGTTT | 1 | 0 | | |
| | | | | | | EctEnv12 | |
| | | | | | | |
| | 4 | POS | TGAGGCGTAGGCCACGGAGTTT | 1 | 0 | | |
| | | | | | | AerPerni | |
| | | | | | | |
| | 5 | POS | GGTTGCCCGCATTGGCGAGTTT | 1 | 0 | | |
| | | | | | | IgnIslan | |
| | | | | | | |
| | 6 | POS | GTTAGCTTCGGCACCCGGCTTT | 1 | 0 | | |
| | | | | | | MemSilva | |
| | | | | | | |
| | 7 | POS | GATAACCCCCGCTACGCCCTTT | 1 | 0 | | |
| | | | | | | SfpZilli | |
| | | | | | | |
| | 8 | POS | AGGGATGGTGCCGTAGCCCTTT | 1 | 0 | | |
| | | | | | | CeaPBA1 | |
| | | | | | | |
| | 9 | POS | GATAACCCCCACCGCACCCTTT | 1 | 0 | | |
| | | | | | | SapMarin | |
| | | | | | | |
| | 10 | POS | TCCGCCAGTACCTCCGACCTTT | 1 | 0 | | |
| | | | | | | AidSpeci | |
| | | | | | | |
| | 11 | POS | TTGGTTCAACGGCGGGTGGGTT | 1 | 0 | | |
| | | | | | | ThpNeutr | |
| | | | | | | |
| | 12 | POS | TATCTCCCCCAATCCCCGGGTT | 2 | 0 | | |
| | | | | | | SfpZilli | |
| | | | | | | Py5Occul | |
| | | | | | | |
| | 13 | POS | ACCCCACCCTTTCAGGCAGGTT | 4 | 0 | | |
| | | | | | | ThsBrock | |
| | | | | | | ThsSpe19 | |
| | | | | | | ThsSpec8 | |
| | | | | | | ThsSpe20 | |
| | | | | | | |
| | 14 | POS | CCCCACTTATTCTCCCGGCGTT | 3 | 0 | | |
| | | | | | | UncArc46 | |
| | | | | | | UncArc45 | |
| | | | | | | PrbArsen | |
| | | | | | | |
| | 15 | POS | ACCGTCACCATCGTCCCGAGTT | 1 | 0 | | |
| | | | | | | MemChlia | |
| | | | | | | |
| | 16 | POS | GCAGGGGTTGTGGGATTGGCTT | 2 | 0 | | |
| | | | | | | MlhSpec2 | |
| | | | | | | MlhSpec3 | |
| | | | | | | |
| | 17 | POS | TTCCTTTCGGGGAGGGAGCCTT | 1 | 0 | | |
| | | | | | | ThrModes | |
| | | | | | | |
| | 18 | POS | GCCCATCCGGAAGATCACCCTT | 1 | 0 | | |
| | | | | | | ThsSpec4 | |
| | | | | | | |
| | 19 | POS | CGTTAACCCCTGCCACACCCTT | 3 | 0 | | |
| | | | | | | Uclss__8 | |
| | | | | | | DesMobi2 | |
| | | | | | | DesMobil | |
| | | | | | | |
| | 20 | POS | AGCAAGCTGGGCCGTTCGACTT | 1 | 0 | | |
| | | | | | | DeiRadi4 | |
| | | | | | | |
| | 21 | POS | CATAAAACAGCCCGTCCGACTT | 1 | 0 | | |
| | | | | | | MemTaiwa | |
| | | | | | | |
| | 22 | POS | CCCGAAGCAAGGAGCCTCACTT | 1 | 0 | | |
| | | | | | | AidInfe2 | |
| | | | | | | |
| | 23 | POS | CGCCTAGCTTCGGGAGGTGATT | 4 | 0 | | |
| | | | | | | AerPerni | |
| | | | | | | AerPern2 | |
| | | | | | | AerPern3 | |
| | | | | | | AerPern4 | |
| | | | | | | |
| | 24 | POS | TGGCATCGCTTTGTAGGGCATT | 1 | 0 | | |
| | | | | | | ThsTher8 | |
| | | | | | | |
| | 25 | POS | TTCCAGCGCGTTCCGTGCATGT | 1 | 0 | | |
| | | | | | | DeiProte | |
| | | | | | | |
| | 26 | POS | TTGAAGACGTTGCGCGCCTGGT | 1 | 0 | | |
| | | | | | | SulMetal | |
| | | | | | | |
| | 27 | POS | AGATGCGTCGGGTTCTGGAGGT | 1 | 0 | | |
| | | | | | | ThpSpec2 | |
| | | | | | | |
| | 28 | POS | ATCCGAGGACTTTGGGGCAGGT | 1 | 0 | | |
| | | | | | | DeiRadi5 | |
| | | | | | | |
| | 29 | POS | TAGTTCGGTCTTGGGGGCAGGT | 5 | 0 | | |
| | | | | | | DeiGeoth | |
| | | | | | | DeiGeot4 | |
| | | | | | | DeiGeot2 | |
| | | | | | | DeiGeot3 | |
| | | | | | | DeiGeot5 | |
| | | | | | | |
| | 30 | POS | ACCGTCATCCCGCCTAAAGCGT | 2 | 0 | | |
| | | | | | | DeiMurra | |
| | | | | | | DeiMurr2 | |
| | | | | | | |
| | 31 | POS | TTCGCACTTCAGCGTCACGAGT | 6 | 0 | | |
| | | | | | | ThsSpe16 | |
| | | | | | | ThsSpe17 | |
| | | | | | | ThsSpe10 | |
| | | | | | | ThsSpec9 | |
| | | | | | | UncBa265 | |
| | | | | | | ThsAquat | |
| | | | | | | |
| | 32 | POS | TCCCCCATCGCGAGGAAGAAGT | 3 | 0 | | |
| | | | | | | AhnICHT | |
| | | | | | | AidAmbiv | |
| | | | | | | AidAmbi2 | |
| | | | | | | |
| | 33 | POS | GAAGCCTCACCCCTCCTTCTCT | 1 | 0 | | |
| | | | | | | UniArc54 | |
| | | | | | | |
| | 34 | POS | ATTCCAGATTCCCCTGCCCGCT | 4 | 0 | | |
| | | | | | | MlhSedu2 | |
| | | | | | | MlhSedul | |
| | | | | | | MlhSedu3 | |
| | | | | | | MlhPruna | |
| | | | | | | |
| | 35 | POS | TCTAGACGCCTGCCGCAAAGCT | 2 | 0 | | |
| | | | | | | DeiRadio | |
| | | | | | | DeiRadi3 | |
| | | | | | | |
| | 36 | POS | CCCGTTATAGGTTTGCGGGCCT | 1 | 0 | | |
| | | | | | | SygAzori | |
| | | | | | | |
| | 37 | POS | ACCCTCTCGGACCGTTTAGCCT | 2 | 0 | | |
| | | | | | | MemTaiwa | |
| | | | | | | MemTaiw2 | |
| | | | | | | |
| | 38 | POS | CGGTATGTGACCCGCGATTACT | 1 | 1 | | |
| | | | | | | DeiRadio | |
| | | | | | | AncBact6 | |
| | | | | | | |
| | 39 | POS | CCGTAGGACGGGGTAAGCAACT | 1 | 0 | | |
| | | | | | | PrbArsen | |
| | | | | | | |
| | 40 | POS | CCTTACCCGGGAGCGTACAACT | 3 | 0 | | |
| | | | | | | SulSolf4 | |
| | | | | | | SflMS1 | |
| | | | | | | MlhSedu2 | |
| | | | | | | |
| | 41 | POS | CCAGTACTTGCCCCCCGCTTAT | 1 | 0 | | |
| | | | | | | UncArc46 | |
| | | | | | | |
| | 42 | POS | CGTTTCCCGTCCTGGTGCCTAT | 1 | 0 | | |
| | | | | | | PrbAerop | |
| | | | | | | |
| | 43 | POS | CCTCGCGGGAAAGGAGTTCGAT | 5 | 0 | | |
| | | | | | | SulAcido | |
| | | | | | | SulAcid2 | |
| | | | | | | SulThuri | |
| | | | | | | SulSolf2 | |
| | | | | | | SulAcid3 | |
| | | | | | | |
| | 44 | POS | AACTGGGCCCACCTTTTGCGAT | 1 | 0 | | |
| | | | | | | ThsTher3 | |
| | | | | | | |
| | 45 | POS | ATGGCTTAAGCCCTACCCCGAT | 1 | 0 | | |
| | | | | | | PrbOguni | |
| | | | | | | |
| | 46 | POS | GTCTCCAGCGCCTTCCTAGCAT | 1 | 0 | | |
| | | | | | | DeiRadi2 | |
| | | | | | | |
| | 47 | POS | CCAACACGATGGAACAGCACAT | 1 | 0 | | |
| | | | | | | DeiGrand | |
| | | | | | | |
| | 48 | POS | ACCCCAAAGGGCACGACCACAT | 8 | 0 | | |
| | | | | | | ThsSpe16 | |
| | | | | | | ThsFilif | |
| | | | | | | ThsSpe17 | |
| | | | | | | ThsSpe10 | |
| | | | | | | ThsSpec9 | |
| | | | | | | ThsSpe14 | |
| | | | | | | ThsSpe11 | |
| | | | | | | ThsSpe12 | |
| | | | | | | |
| | 49 | POS | AGCCGGAGCCCGTGATACCAAT | 1 | 0 | | |
| | | | | | | SulSpe12 | |
| | | | | | | |
| | 50 | POS | CCGCCACTAGCCTGACCGAAAT | 2 | 0 | | |
| | | | | | | MemSilv3 | |
| | | | | | | MemSilv2 | |
| | | | | | | |
| | 51 | POS | CGGGTGGCTTCGCTTTGTAGTG | 10 | 0 | | |
| | | | | | | ThsTher3 | |
| | | | | | | ThsTher2 | |
| | | | | | | ThsTherm | |
| | | | | | | ThsTher6 | |
| | | | | | | ThsTher5 | |
| | | | | | | ThsTher7 | |
| | | | | | | ThsTher4 | |
| | | | | | | ThsSpe15 | |
| | | | | | | ThsSpeci | |
| | | | | | | ThsSpe13 | |
| | | | | | | |
| | 52 | POS | AACGCTGGCAGTCCCCCTAATG | 3 | 0 | | |
| | | | | | | CeaPBA2 | |
| | | | | | | PrbOguni | |
| | | | | | | SulSpe12 | |
| | | | | | | |
| | 53 | POS | TCCAGCACCCTTCACCTATGGG | 3 | 0 | | |
| | | | | | | CalMaqui | |
| | | | | | | PrbIslan | |
| | | | | | | SflMS1 | |
| | | | | | | |
| | 54 | POS | TTCACAACAGGAGCTGGCGAGG | 1 | 1 | | |
| | | | | | | SulYangm | |
| | | | | | | ColPsyc2 | |
| | | | | | | |
| | 55 | POS | TCAGCGTCACAAGTGAGCCAGG | 3 | 0 | | |
| | | | | | | ThsOPB31 | |
| | | | | | | ThsSpe18 | |
| | | | | | | ThsSpe22 | |
| | | | | | | |
| | 56 | POS | CCCTTTGAACGTACCCCACAGG | 4 | 0 | | |
| | | | | | | UncBa265 | |
| | | | | | | ThsAquat | |
| | | | | | | ThsSpe22 | |
| | | | | | | ThsSpec4 | |
| | | | | | | |
| | 57 | POS | TAACTATGAGGTGATCCAGCCG | 1 | 0 | | |
| | | | | | | SulSolfa | |
| | | | | | | |
| | 58 | POS | CACTGGCTGCATAAACAGCCCG | 6 | 0 | | |
| | | | | | | MemTaiw2 | |
| | | | | | | MemRube2 | |
| | | | | | | MemRuber | |
| | | | | | | MemRube3 | |
| | | | | | | MemRube4 | |
| | | | | | | MemRosac | |
| | | | | | | |
| | 59 | POS | CTTGTTACAGACTTCGCCCCAG | 1 | 2 | | |
| | | | | | | ThsScoto | |
| | | | | | | NodSpumi | |
| | | | | | | GluSacch | |
| | | | | | | |
| | 60 | POS | AACTATGAGGTGATCCAGCCGC | 4 | 0 | | |
| | | | | | | SulSolfa | |
| | | | | | | SulAcid2 | |
| | | | | | | SulSolf2 | |
| | | | | | | SulAcid3 | |
| | | | | | | |
| | 61 | POS | CACAAATGTGAGGTGATCCAGC | 2 | 0 | | |
| | | | | | | MlhSedul | |
| | | | | | | MlhSpec2 | |
| | | | | | | |
| | 62 | POS | ACATGTGGATCAGGTGGCTGCC | 3 | 0 | | |
| | | | | | | ThsOPB19 | |
| | | | | | | ThsOPB32 | |
| | | | | | | EctEnv12 | |
| | | | | | | |
| | 63 | POS | TTAGGAGGAGACTTGCCGAGCC | 2 | 0 | | |
| | | | | | | Uclss__8 | |
| | | | | | | TdcMarit | |
| | | | | | | |
| | 64 | POS | CTTTATGTGAGGTGATCCAGCC | 2 | 0 | | |
| | | | | | | SfrOhwak | |
| | | | | | | AidBrier | |
| | | | | | | |
| | 65 | POS | ACAACTCCCATGGCTTAACCCC | 1 | 0 | | |
| | | | | | | SulSolf4 | |
| | | | | | | |
| | 66 | POS | ACACCTTTTCGAGGAGGGACCC | 1 | 0 | | |
| | | | | | | Uclss__8 | |
| | | | | | | |
| | 67 | POS | TGTCCGCGCCTATGGGGGTTTA | 1 | 0 | | |
| | | | | | | TfmPende | |
| | | | | | | |
| | 68 | POS | GGAAGCGGACTCTCGCCCTTTA | 5 | 0 | | |
| | | | | | | ThsBrock | |
| | | | | | | ThsSpe19 | |
| | | | | | | ThsSpec8 | |
| | | | | | | ThsSpe20 | |
| | | | | | | ThsSpe26 | |
| | | | | | | |
| | 69 | POS | AGTTACCCAGGGGGCCTCGTTA | 1 | 0 | | |
| | | | | | | CalMaqui | |
| | | | | | | |
| | 70 | POS | CGCTTATTCGCCCGGCTCCTTA | 3 | 0 | | |
| | | | | | | ThpTenax | |
| | | | | | | ThpSpeci | |
| | | | | | | ThpSpec2 | |
| | | | | | | |
| | 71 | POS | CCAGGCTTATCCCTACCCCGTA | 1 | 0 | | |
| | | | | | | SulSpe10 | |
| | | | | | | |
| | 72 | POS | CTACGGCGCTTTAGGCCCAGTA | 2 | 0 | | |
| | | | | | | AerPern5 | |
| | | | | | | AerPerni | |
| | | | | | | |
| | 73 | POS | CCGGAGCCCATGATGCCAACTA | 2 | 0 | | |
| | | | | | | SygAzor2 | |
| | | | | | | SygAzori | |
| | | | | | | |
| | 74 | POS | GCGTTAGCTTCGGCCCCAGATA | 1 | 0 | | |
| | | | | | | UncBa265 | |
| | | | | | | |
| | 75 | POS | AGGCGCTCATGAGCGGGGAATA | 3 | 0 | | |
| | | | | | | SulShiba | |
| | | | | | | SulSolf3 | |
| | | | | | | SulSolfa | |
| | | | | | | |
| | 76 | POS | GCTCGGTACCCAAAGGAGGTGA | 1 | 0 | | |
| | | | | | | ThsSpeci | |
| | | | | | | |
| | 77 | POS | CGAGAGGCATTTAGGTAAGGGA | 1 | 0 | | |
| | | | | | | MlhSpeci | |
| | | | | | | |
| | 78 | POS | TTCTAGTGTGGACGTCTCCGGA | 1 | 0 | | |
| | | | | | | MlhSedu3 | |
| | | | | | | |
| | 79 | POS | ACTGCCGAAACAGTCCGTGCGA | 4 | 0 | | |
| | | | | | | ThsSpe21 | |
| | | | | | | MemCerbe | |
| | | | | | | MemCerb2 | |
| | | | | | | ThsSpe23 | |
| | | | | | | |
| | 80 | POS | GGCCCCCAGATAAACCCAGAGA | 1 | 0 | | |
| | | | | | | ThsScot2 | |
| | | | | | | |
| | 81 | POS | ATTCCCCACCCGAAGGGCAAGA | 1 | 0 | | |
| | | | | | | AidBrie2 | |
| | | | | | | |
| | 82 | POS | ATTCCCCACCCCGAAGGCAAGA | 3 | 0 | | |
| | | | | | | AidAmbi2 | |
| | | | | | | AidBrie3 | |
| | | | | | | AidBrier | |
| | | | | | | |
| | 83 | POS | GCCCCCAGGTAAACCCCAAAGA | 3 | 0 | | |
| | | | | | | ThsSpec3 | |
| | | | | | | ThsSpec6 | |
| | | | | | | ThsScoto | |
| | | | | | | |
| | 84 | POS | GGGGGTTTTCGTCCCAGGTTCA | 1 | 0 | | |
| | | | | | | ThsOshim | |
| | | | | | | |
| | 85 | POS | ATTGCCTCCCCTTTCGGGGTCA | 1 | 0 | | |
| | | | | | | SulSpe11 | |
| | | | | | | |
| | 86 | POS | CGTAGCCTGGGCCATTGTCTCA | 1 | 0 | | |
| | | | | | | AidBrier | |
| | | | | | | |
| | 87 | POS | CACAGGAGGGAGCAGCACATCA | 1 | 0 | | |
| | | | | | | DeiSpeci | |
| | | | | | | |
| | 88 | POS | GGTGGCATCGCTTTGTAGGGCA | 6 | 0 | | |
| | | | | | | ThsTher6 | |
| | | | | | | ThsTher5 | |
| | | | | | | ThsTher7 | |
| | | | | | | ThsTher8 | |
| | | | | | | ThsTher4 | |
| | | | | | | ThsSpe15 | |
| | | | | | | |
| | 89 | POS | TCGAACCCCCACCTATACGGCA | 1 | 0 | | |
| | | | | | | SflMS1 | |
| | | | | | | |
| | 90 | POS | CGTACCCCACAGGATACGTCCA | 2 | 0 | | |
| | | | | | | ThsSpe22 | |
| | | | | | | ThsSpec4 | |
| | | | | | | |
| | 91 | POS | TTAACGGCTTCCTGCGGCACCA | 2 | 0 | | |
| | | | | | | SfrOhwa2 | |
| | | | | | | SfrOhwak | |
| | | | | | | |
| | 92 | POS | CGGGCTCGTCACCCTTTAAACA | 4 | 0 | | |
| | | | | | | ThsIgnit | |
| | | | | | | ThsIgni2 | |
| | | | | | | ThsSpec7 | |
| | | | | | | ThsIgni3 | |
| | | | | | | |
| | 93 | POS | GCCCCCTCCTTCCTCGTCTTAA | 1 | 0 | | |
| | | | | | | AidBrie3 | |
| | | | | | | |
| | 94 | POS | GCCCGCACGGCGCGTTTATTAA | 2 | 0 | | |
| | | | | | | AerPern3 | |
| | | | | | | AerPern4 | |
| | | | | | | |
| | 95 | POS | TCTCCCCCATCGCGAGGAAGAA | 2 | 0 | | |
| | | | | | | AidInfer | |
| | | | | | | AidAmbiv | |
| | | | | | | |
| | 96 | POS | CTTCGGCCCCAGGTAAACCCAA | 1 | 0 | | |
| | | | | | | ThsSpe25 | |
| | | | | | | |
| | 97 | POS | GGGAGTTCGACCCGACCAACAA | 2 | 0 | | |
| | | | | | | TpeAggre | |
| | | | | | | SfpZilli | |
| | | | | | | |
| | 98 | POS | TCCGCCGCTGGGTAGGCATAAA | 5 | 0 | | |
| | | | | | | ThsAntra | |
| | | | | | | ThsAntr2 | |
| | | | | | | ThsAntr3 | |
| | | | | | | ThsAntr4 | |
| | | | | | | ThsAntr5 | |
| | | | | | | |
| | 99 | POS | TGCGCCACTCAGCCTCCGAAAA | 1 | 0 | | |
| | | | | | | DeiMurr3 | |
| | | | | | | |
| | 100 | NEG | TCCGGTTTGTCACCGGCAGTCT | 0 | 4 | | |
| | | | | | | |
* Short names of the target sequences are related to "name" within the ARB-database
"ssujun02.arb" which can be retrieved from
www.arb-home.de.